Package: cbioportalR
Title: Browse and Query Clinical and Genomic Data from cBioPortal
Version: 1.1.1
Authors@R: 
    c(person(given = "Karissa",
           family = "Whiting",
           role = c("aut", "cre", "cph"),
           email = "karissa.whiting@gmail.com",
           comment = c(ORCID = "0000-0002-4683-1868")))
Description: Provides R users with direct access to genomic and
        clinical data from the 'cBioPortal' web resource via
        user-friendly functions that wrap 'cBioPortal's' existing API
        endpoints
        <https://www.cbioportal.org/api/swagger-ui/index.html>. Users
        can browse and query genomic data on mutations, copy number
        alterations and fusions, as well as data on tumor mutational
        burden ('TMB'), microsatellite instability status ('MSI'),
        'FACETS' and select clinical data points (depending on the
        study). See <https://www.cbioportal.org/> and Gao et al.,
        (2013) <doi:10.1126/scisignal.2004088> for more information on
        the cBioPortal web resource.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: testthat (>= 3.1.4), knitr (>= 1.39), rmarkdown (>= 2.14),
        covr (>= 3.5.1), spelling
Depends: R (>= 2.10)
Imports: httr (>= 1.4.3), tibble (>= 3.1.7), purrr (>= 0.3.4), magrittr
        (>= 2.0.3), rlang (>= 1.0.3), glue (>= 1.6.2), jsonlite (>=
        1.8.0), tidyr (>= 1.2.0), dplyr (>= 1.0.9), stringr (>= 1.4.0),
        cli (>= 3.3.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/karissawhiting/cbioportalR,
        https://www.karissawhiting.com/cbioportalR/
BugReports: https://github.com/karissawhiting/cbioportalR/issues
Language: en-US
Config/pak/sysreqs: libicu-dev libssl-dev
Repository: https://karissawhiting.r-universe.dev
Date/Publication: 2024-11-25 16:42:26 UTC
RemoteUrl: https://github.com/karissawhiting/cbioportalr
RemoteRef: HEAD
RemoteSha: f565f88bc45233dea0a4af6ccf436473f76d5e0e
NeedsCompilation: no
Packaged: 2026-06-18 10:45:20 UTC; root
Author: Karissa Whiting [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-4683-1868>)
Maintainer: Karissa Whiting <karissa.whiting@gmail.com>