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cbioportalR - Browse and Query Clinical and Genomic Data from cBioPortal

Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly functions that wrap 'cBioPortal's' existing API endpoints <https://www.cbioportal.org/api/swagger-ui/index.html>. Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study). See <https://www.cbioportal.org/> and Gao et al., (2013) <doi:10.1126/scisignal.2004088> for more information on the cBioPortal web resource.

Last updated 3 days ago

6.83 score 19 stars 22 scripts 172 downloads

bstfun - Functions for the MSK Biostatistics Department

A miscellaneous collection of functions to used by members of the Biostatistics Department at MSKCC.

Last updated 2 years ago

4.87 score 34 stars 31 scripts